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User Instruction

Functions Description Input Output
Conversion From protein 3D structure to Protein Folding Shape Code (PFSC ),which provides complete conformation description, including secondary structure fragments as well as tertiary structure fragments PDB file Screen display ; Save as a file with RTF, XML or Words format
Alignment Compare a pair of protein conformations in PFSC and make an quantitative assessment A pair of PFSC or a pair of PDB files Screen display ; Save as a file with RTF, XML or Words format
Search Discover fragments with conformation homology from a specific protein fingerprint database A piece of PFSC or a fragment defined in PDB Screen display ; Save as a file with RTF, XML or Words format
Prediction From a protein AA sequence to generate a Protein Folding Variation Matrix (PFVM),which has complete aggregation for local folding variations and comprehensive information for protein conformations a AA sequence in single letter Screen display ; Save as a file with RTF, XML or Words format
Mutation Provide information how mutation causes conformation changes, which help protein / peptide design A pair of AA sequences with mutations Screen display ; Save as a file with RTF, XML or Words format
Differentiation Provide information how protein differentiation relates to conformation difference, which helps to understand the differentiation of same protein in different organisms A pair of AA sequences of same protein from different organisms Screen display ; Save as a file with RTF, XML or Words format
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