Other Databases

Database Name
Protein Data Bank a single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids.
The Universal Protein Resource (UniProt) a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).
DrugBank database a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. 
NCBI The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.
BindingDB database a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.
FDA Approved Drugs by Therapeutic Area Search by therapeutic area for drugs approved by the Food and Drug Administration (FDA) for sale in the United States.
FDA Approved Drug database Search US FDA approved drugs and products.
PDBsum a pictorial database that provides an at-a-glance overview of the contents of each 3D structure deposited in the Protein Data Bank (PDB). 
SCOP a database classifies protein structures into Folds, Superfamilies, and Families.
CASP  The Critical Assessment of protein Structure Prediction (CASP) experiments aim at establishing the current state of the art in protein structure prediction, identifying what progress has been made, and highlighting where future effort may be most productively focused.
ModBase  a database of comparative protein structure models, calculated by our modeling pipeline ModPipe
Protein Model Portal (PMP)  PMP gives access to various models computed by comparative modeling methods provided by different partner sites, and provides access to various interactive services for model building, and quality assessment.
Dynameomics a continuing project in the Daggett group to characterize the native state dynamics and the folding / unfolding pathway of representatives from all known protein folds by molecular dynamics simulation.
FASTA This tool provides sequence similarity searching against protein databases using the FASTA suite of programs.
Kinome Explores the functions, evolution and diversity of protein kinases, the key controllers of cell behavior. It focuses on the kinome, the full complement of protein kinases in any sequenced genome. This includes our extensive KinBase database, and papers and supporting material for our published kinase work fromSugen and the Salk Institute. KinBase holds information on over 3,000 protein kinase genes found in the genomes of human, and many other sequenced genomes. 
GEMDOCK a Generic Evolutionary Method for molecular DOCKing GEMDOCK is a program for computing a ligand conformation and orientation relative to the active site of target protein. 
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
ZINC a free database of commercially-available compounds for virtual screening.   ZINC contains over 35 million purchasable compounds in ready-to-dock, 3D formats.  
Therapeutic Target Database Therapeutic Target Database;  Traditional Chinese Medicine Information Database; Computed Ligand Binding Energy; Kinetic Data of Biomolecular Interactions 
SAS SAS - Sequence Annotated by Structure a tool for applying structural information to a given protein sequence. It uses FASTA to scan a given protein sequence against all the proteins of known 3D structure in the Protein Data Bank (PDB).
KEGG KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies (See Release notes for new and updated features).

* All technologies are under intellectual property protection.


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